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arXiv preprints from January 1, 2026 through September 23, 2026 — 14:15:38 EST

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Posted in econ.EM · 2026-07-20 · Fangzhou Yu

Identification and Inference with Machine-Learned Instruments

Instrumental-variables estimation increasingly pools many or high-dimensional instruments into a single machine-learned first stage, with rich controls partialled out. The resulting estimand, the partialled-out IV coefficient built from any signal of the instruments, is a signal-weighted average of the heterogeneous effects, which...

💬 0 commentsarXiv:2607.17478v1PDF
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Posted in econ.EM · 2026-07-20 · Fangzhou Yu

A Variance-Based Test for Heterogeneous Treatment Effects

This paper proposes a robust nonparametric hypothesis test for the existence of heterogeneous treatment effects. We focus on the variance of the Conditional Average Treatment Effect (CATE) as a natural omnibus parameter, where a non-zero variance implies the presence of relevant heterogeneity. Standard inference for this parameter...

💬 0 commentsarXiv:2607.17451v1PDF
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Posted in econ.EM · 2026-07-19 · Yuya Shimizu

Econometrics with Pre-Trained Embeddings for Unstructured Data

Unstructured data, such as images and text, are increasingly used in empirical economics. Since training machine-learning models on unstructured data is costly, economists often use off-the-shelf pre-trained deep learning models developed by computer scientists to extract embeddings, which are then used as covariates in target...

💬 0 commentsarXiv:2607.17378v1PDF
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Posted in cs.LG · 2026-07-19 · Silviu Pitis

Rationalizing Boltzmann Rationality: An Axiomatic Characterization of Entropy-Regularized Policies

The softmax policy $π(a \mid s) \propto \exp(βQ(s,a))$ is the default model of stochastic choice in reinforcement learning (RL). Various justifications based on robustness, exploration, and optimization have been offered in the RL literature, but none uniquely derives the softmax form from first principles. This leaves a basic tension...

💬 0 commentsarXiv:2607.17316v1PDF
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Posted in econ.EM · 2026-07-19 · Paritosh Shankarrao Junare

Two Gaussians, Too Many: A bootstrap-based approach to assess identifiability in non-Gaussian structural Vector Autoregressions

Standard pre-tests of normality on reduced-form innovations are insufficient to detect two or more Gaussian shocks and hence, the failure of identification in non-Gaussian SVARs. We instead propose a bootstrap-based approach to evaluate the asymptotic validity of this condition by measuring the divergence between the conditional...

💬 0 commentsarXiv:2607.17275v1PDF
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Posted in econ.GN · 2026-07-19 · Nisha Peng, John Stachurski, Jingni Yang, Ziyue Yang

Faithful Decoding

This paper studies transformations that increase efficiency in solving equilibrium systems without information loss. Our approach exploits order-theoretic structure commonly found in economic problems to obtain conditions under which high-dimensional systems can be transformed into low-dimensional systems while preserving exact...

💬 0 commentsarXiv:2607.17073v1PDF
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Posted in econ.EM · 2026-07-18 · Onil Boussim

Compositional Synthetic Controls

This paper develops a synthetic control estimator for compositional outcomes, vectors of shares generated by an underlying categorical process. Derived from a random utility model with interactive fixed effects on relative systematic utilities, the estimator maps compositions to log-odds, where the standard convex hull condition...

💬 0 commentsarXiv:2607.16991v1PDF
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Posted in econ.EM · 2026-07-18 · Juan C. Yamin

When and How to Pilot: Design Rules for Two-Wave Experiments

Experimenters often run pilots, but how much a small pilot should shape the main-wave design has no settled answer. This paper shows how noisy pilot evidence should guide treatment assignment probabilities in two-wave experiments. Two canonical rules mark the extremes. Balanced assignment guards against worst cases but ignores...

💬 0 commentsarXiv:2607.16982v1PDF
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Posted in econ.TH · 2026-07-18 · Christopher P. Chambers, Yusufcan Masatlioglu, R. Emilio Muniz-Langle

Belief Identification in Populations

We study the identification of belief distributions in a population of Bayesian agents from anonymous aggregate belief data. While a single Bayesian agent's full belief can be recovered from beliefs over a suitable collection of binary events, this principle need not extend to populations: event-by-event distributions of beliefs may...

💬 0 commentsarXiv:2607.16952v1PDF
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Posted in econ.TH · 2026-07-18 · Jonathan Libgober

Organization Design for Complex Worlds

I study the role of \emph{horizontal complexity} -- defined as the variation in actions that similar tasks require -- in organization design. A continuum of workers each choose an action to adapt to a local state that follows a Gaussian process across locations. Headquarters can group workers into \emph{teams}, simplifying the...

💬 0 commentsarXiv:2607.16640v1PDF
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Posted in econ.EM · 2026-07-18 · Yuhao Li, Haokun Lu, Xiaojun Song

Kernel Minimum Distance Estimation and Testing with Conditional Moment Restrictions: A Unified Framework

We propose a unified Kernel Minimum Distance (KMD) framework for estimating and testing models defined by conditional moment restrictions. By embedding conditional moments into a Reproducing Kernel Hilbert Space (RKHS), we construct a closed-form $V$-statistic objective function that quantifies the distance from the restrictions. We...

💬 0 commentsarXiv:2607.16605v1PDF
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Posted in econ.TH · 2026-07-16 · Chupeng Xie

When Pricing Agents Meet Buying Agents: Personalized Pricing and Verifiable Trust

Same fairness rule, different posterior, no trade. We study personalized pricing when seller and buyer principals delegate to agents that receive different value signals and execute machine-enforced mandates. Equal nominal surplus rules can be incompatible because each is applied to its agent's posterior. In one common environment, we...

💬 0 commentsarXiv:2607.16343v1PDF
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Posted in cs.CL · 2026-07-20 · Zhida He, Xia Hu, Baichen Le, Chunxiao Li, Jiajia Li, Lijun Li, Chaochao Lu, Jing Shao, Youbang Sun, Hua Tang, Xiang Wang, Xiao Wang, Xiaoyu Wen, Tong Wu, Jia Xu, Peng Yu, Shu Yu, Jie Zhang, Qiaosheng Zhang, Yi Zhang, Xing-Ming Zhao, Tianhang Zheng, Ziyuan Zhou

An Early Warning of Emerging Biosecurity Risks in Frontier LLMs

Frontier large language models (LLMs) are increasingly integrated into scientific workflows, yet their growing biological capabilities may outpace current safeguards. To assess the biological risks of frontier models, we develop Intern-BioBreaker, a specialized bio-red-teaming model, together with an integrated...

💬 0 commentsarXiv:2607.18056v1PDF
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Posted in q-bio.BM · 2026-07-20 · Alessandro Pandolfi, Riccardo Beccaria, Guido Tiana

The energy landscape of DNA-binding proteins along the genome

Reconstructing the energy profile of DNA-binding proteins along the genome requires an algorithm that quantifies efficiently the binding free energy. We assembled a dataset of protein structures and DNA binding sites, together with their binding energies, and used it to train a machine-learning algorithm that learns a latent invariant...

💬 0 commentsarXiv:2607.17753v1PDF
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Posted in physics.bio-ph · 2026-07-20 · Nashita Rahman, Mintu Nandi, Sudip Chattopadhyay, Suman K Banik

Feedback-mediated circulation and persistence of stochastic fluctuations in gene regulatory circuits

Feedback plays a significant role in biochemical networks that govern a multitude of cellular functions, including development, adaptation, and homeostasis. Yet, how feedback topology controls stochastic fluctuations remains incompletely understood. Here, we develop a theoretical framework for two-node feedback motifs composed of...

💬 0 commentsarXiv:2607.17743v1PDF
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Posted in q-bio.PE · 2026-07-20 · Domenico Caudo, Mattia Miotto, Giancarlo Ruocco, Greta Grassmann

How genome redundancy can promote evolutionary innovation

Polyploidy is defined as the existence of more than two complete sets of homologous chromosomes. Despite it being a widespread phenomenon across the tree of life, its role as either an evolutionary innovation or a dead end is still debated. Here, we investigate how under varying selective pressures the degree of ploidy interacts with...

💬 0 commentsarXiv:2607.17687v1PDF
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Posted in eess.SY · 2026-07-20 · Enrique Baeyens

Graph-Induced Tensor Liftings for Networked SEIR Models: Dimensional Reduction and Residual Analysis

Networked SEIR models describe epidemic spread within and between interacting subpopulations through contact-supported nonlinear transmission. Standard polynomial liftings based on complete ordered Kronecker tensors yield linear higher-dimensional representations, but their dimensions grow rapidly because they retain interactions...

💬 0 commentsarXiv:2607.17664v1PDF
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Posted in cs.CV · 2026-07-20 · Joey Páolo Kardolus, Daan Hendriks, Jaap Jansen

Direct Clinical Joint Angle Extraction from Parametric Body Model Rotation Matrices

Quantitative joint angles are rarely available in routine care because the tools are slow, costly, or confined to a laboratory. We show that clinical joint angles can be read directly from the per-segment rotation matrices a parametric body model already produces, with no inverse-kinematics or musculoskeletal-model fitting step. On...

💬 0 commentsarXiv:2607.17639v1PDF
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Posted in q-bio.NC · 2026-07-20 · Richard Leahy, Takfarinas Medani

Exploring Brain Networks Using Noninvasive Electrophysiological Measurements: Methods and Applications

Electroencephalography (EEG) and magnetoencephalography (MEG) provide noninvasive measurements of brain activity with millisecond temporal resolution, enabling the investigation of functional and effective interactions within large-scale brain networks. This chapter presents a comprehensive overview of the methodological foundations...

💬 0 commentsarXiv:2607.17602v1PDF
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Posted in q-bio.GN · 2026-07-19 · Pratyush Kumar Shukla, Manveer Singh Tib, Siddhant Garg

Evaluating Conformal Reliability of Pathway-Level Transcriptomic Signatures Under Cross-Cohort Shift in Sepsis Mortality Prediction

Blood transcriptomic profiling enables prognostic modeling by capturing the host immune response at the molecular level. Yet, the within-cohort evaluation strategies employed by many transcriptomic models inadequately reflect deployment across independent hospitals. Outside deployment scenarios introduce a cohort shift that can...

💬 0 commentsarXiv:2607.17405v1PDF
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Posted in cs.LG · 2026-07-19 · Mohammed Saeed Al-Huraibi, Ihsan Yozgat, Ahmet Kaplan

A multiverse-consensus pipeline for reproducible feature selection in untargeted LC-MS metabolomics

Background: Untargeted LC-MS metabolomics requires a long chain of preprocessing decisions, each with several equally defensible options. Analysts typically commit to one pipeline and report the resulting feature shortlist. How strongly that shortlist depends on choices that were never varied stays invisible. Results: We adapt...

💬 0 commentsarXiv:2607.17345v1PDF
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Posted in q-bio.GN · 2026-07-19 · Sally Chen, Roxana Zahedi, Lucy Chhuo, Ricky Nguyen, Marjan BaghGolshani, Amin Beheshti, Mark Grosser, Min Yang, Nona Farbehi, Nigel Lovell, Ahmadreza Argha, Fatemeh Vafaee, Youqiong Ye, Hamid Alinejad-Rokny

Harmonised benchmarking of foundation models for single-cell and spatial transcriptomics reveals context-dependent generalisation

Single-cell and spatial foundation models promise transferable biological representations, yet their generality remains largely untested across modalities, biological domains and analytical tasks. We benchmarked six representative models, Nicheformer, CellPLM, scGPT-spatial, GenePT, scELMo and Novae, using a harmonised framework...

💬 0 commentsarXiv:2607.17227v1PDF
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Posted in q-bio.BM · 2026-07-19 · Eun Lee, Petter Holme

Network Characteristics of Individual Pigments in Cyanobacterial Photosystem II Core Complexes

Part of the excitation energy transfer (EET) characteristics of the photosystem II (PSII) comes from the interconnection between pigments. To understand the correlation between the EET and the pigments' interaction structure, we construct a network from the EET rates, which are related to both the distance between the pigments...

💬 0 commentsarXiv:2607.17096v1PDF
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Posted in q-bio.QM · 2026-07-18 · Kenny Wong, Thomas Mourier, Cameron Hopkinson

Post-transcriptional Regulation of Stochastic Gene Expression Conditioned on Large Deviations

Gene expression is a stochastic process that gives rise to large fluctuations in protein levels leading to phenotypic heterogeneity in clonal cell populations; post-transcriptional regulation plays a crucial role in controlling the level of phenotypic variability within a population, which is directly tied to cell-fate decisions. As...

💬 0 commentsarXiv:2607.17004v1PDF
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Posted in q-bio.QM · 2026-07-18 · Morgan Sanchez, James A. Diao, Jesse Cummings, Maya Makov-Assif, Liat Antwarg Friedman, Seffi Cohen, Aashna P. Shah, Ben Reis, Ran D. Balicer, Noa Dagan, Arjun K. Manrai

Laboratory Trajectories Improve Kidney Failure Risk Estimation

Accurate kidney failure risk assessment is critical to timely intervention in chronic kidney disease (CKD). Existing equations (e.g. Kidney Failure Risk Equation; KFRE) rely on single laboratory measurements to estimate short- and long-term kidney failure risk, leaving longitudinal laboratory patterns unused. Here we introduce Clalit...

💬 0 commentsarXiv:2607.17000v1PDF