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arXiv preprints from January 1, 2026 through September 22, 2026 — 17:49:16 EST

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Posted in math.OC · 2026-08-31 · Max Studt, Georg Schildbach

Provably Safe Decentralized Contingency MPC under State-Only Information and Limited Sensing for Nonlinear Multi-agent Systems

This paper considers decentralized contingency MPC for multi-agent control under a state-only information pattern, with particular focus on limited sensing and plug-and-play operation. The objective is to retain recursive feasibility, safety, and Lyapunov-type convergence while reducing conservatism in local interaction handling. The...

💬 0 commentsarXiv:2608.30874v1PDF
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Posted in eess.SP · 2026-08-31 · Marco Niederberger, Sebastian Droz, Shaarujan Kamalanathan, Michel A. Nyffenegger, Albert Loichinger, Hans-Dieter Lang

Measurement of Liquid Water Content in Snow from Density-Insensitive Microwave Attenuation

A measurement principle for determining liquid water content (LWC) in snow is presented that does not require a priori knowledge or separate measurement of snow density. LWC affects the imaginary part of the effective permittivity of snow, which is linked to microwave attenuation along a microstrip transmission line embedded in the...

💬 0 commentsarXiv:2608.30864v1PDF
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Posted in q-fin.CP · 2026-08-31 · Fengrui Hua, Hengyi Yang, Xinlei Hao, Haohan Zhang, Bokai Cao, Yiyan Qi, Jia Li, Jian Guo

Agentic Quantitative Trading: A Survey of Workflows, Systems, and Evaluation

Quantitative trading is moving from isolated predictive models toward agentic workflows that combine reasoning, tool use, memory, and feedback. This survey reviews agentic quantitative trading across five stages: factor mining, signal discovery, portfolio construction, order execution, and risk management. We further examine agentic...

💬 0 commentsarXiv:2608.31041v1PDF
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Posted in q-fin.TR · 2026-08-31 · Ezra Goliath, Tim Gebbie

Metaorder modelling and identification from public data

Market-order flow in financial markets exhibits long-range correlations. This is a widely known stylised fact of financial markets. A popular hypothesis for this stylised fact comes from the Lillo-Mike-Farmer (LMF) order-splitting theory. However, quantitative tests of this theory have historically relied on proprietary datasets with...

💬 0 commentsarXiv:2608.30999v1PDF
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Posted in q-fin.CP · 2026-08-31 · Andrea Molent, Michel Vellekoop

Neural Calibration of a Complete Market Model

We propose a neural calibration method to construct a recombining binomial tree directly from a set of given option prices. Rather than estimating a continuous option pricing function or a local volatility surface as an intermediate object, a neural network is used to deform a benchmark lattice. This leads to a discrete pricing model...

💬 0 commentsarXiv:2608.30867v1PDF
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Posted in q-fin.CP · 2026-08-31 · Fang Fang, Xiaoyu Shen, Qinling Wang

Importance Sampling Enhanced with the COS Method for the Portfolio Risk Allocation

We introduce ISCOS, a cross-entropy importance-sampling calibration method for rare credit-portfolio losses. We derive Gaussian and Gaussian--inverse-Gamma proposals and analyse the propagation of finite-COS approximation errors to the fitted parameters. Numerical experiments for Gaussian and Student t-copula credit portfolios show...

💬 0 commentsarXiv:2608.30749v1PDF
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Posted in cs.AR · 2026-08-31 · Nika Mansouri Ghiasi

Storage-Centric System Designs for Enabling Fast, Efficient, and Low-Cost Genomic and Metagenomic Analyses

Genomic and metagenomic analyses play critical roles in many fields, such as precision medicine, urgent clinical settings, discovering early warnings of communicable diseases, ensuring food safety through pathogen monitoring, agriculture, and scientific discovery. Due to the challenges of analyzing and storing massive volumes of...

💬 0 commentsarXiv:2608.31004v1PDF
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Posted in q-bio.PE · 2026-08-31 · Jamila Rowland-Chandler, Akshit Goyal, Wenying Shou

Resource supply dynamics control stability and chaos in complex ecosystems

Ecological interactions are often mediated by feedbacks between organisms and their resource environments. Yet, how resource supply dynamics dictate collective dynamical phases of an ecosystem remains unclear. Here, we analyse a generalised consumer--resource model with non-reciprocal interactions to demonstrate that self-renewing...

💬 0 commentsarXiv:2608.30966v1PDF
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Posted in cs.LG · 2026-08-31 · Raunak Kumar, Anuj Pal, Dhruvi Solanki, Parikshit Pareek, Juhi Singh, Jitin Singla

Coarse composition suffices: tabular in-context learning for multi-activity antimicrobial peptide profiling

Antimicrobial peptides (AMPs) often act against multiple pathogen classes, making multi-label activity prediction a more realistic screening target than binary antimicrobial classification. The ESCAPE benchmark formalizes this setting, but leading approaches typically rely on multimodal, structure-conditioned deep models that are...

💬 0 commentsarXiv:2608.30337v1PDF
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Posted in q-bio.NC · 2026-08-31 · Nima Dehghani

"More Is Different'' in Neural Circuits: Algebraic Emergence of Effective Theories in Canonical Recurrent Motifs of Biological Neuronal Networks

Canonical neural circuit motifs are usually described functionally: divisive normalization rescales population activity by a pooled signal, and winner-take-all competition selects one pattern through recurrent excitation and shared inhibition. We represent them, and their compositions, algebraically as finite transformation systems...

💬 0 commentsarXiv:2608.30231v1PDF
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Posted in cs.LG · 2026-08-31 · Jiaxin Tian, Darren An, Jun Li

Benchmarking Peptide-Protein Affinity Prediction Across Peptide and Target Shifts

Peptide-protein affinity models are often evaluated with a single data split, obscuring whether they interpolate among measurements for observed targets or generalize across peptide or target shifts. We integrated three sources of quantitative peptide-protein binding data to obtain 11,349 deduplicated pairs and benchmarked ten peptide...

💬 0 commentsarXiv:2608.30175v1PDF
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Posted in q-bio.QM · 2026-08-31 · Arya S. Rao, Rodrigo I. Castro, Sager J. Gosai, Kenneth B. Hsu, Yasha Ektefaie, Shantanu Singh, Sangeeta N. Bhatia, Steven K. Reilly, Ryan Tewhey, Eric S. Lander, Pardis C. Sabeti

Science sandboxes measure the scientific capability of AI agents

Scientific progress depends not only on finding solutions, but on learning the rules that explain why they work and using that understanding to design better experiments. We introduce science sandboxes, a framework for studying this capability in AI agents through repeated cycles of experimentation, feedback, and hypothesis revision....

💬 0 commentsarXiv:2608.30165v1PDF
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Posted in q-bio.PE · 2026-08-30 · Robert Valaska, Katarina Bodova

Observation delays can bias inference of selective advantage in evolutionary competition

Relative-frequency trajectories are often used to infer selective advantage in competing biological populations. A common empirical approach is to fit a linear function to the logit-transformed frequency of an invading type and interpret the slope as the relative advantage. Here we test how this estimator is affected when the...

💬 0 commentsarXiv:2608.30085v1PDF
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Posted in q-bio.NC · 2026-08-30 · Shotaro Takasu, Richard Gast, Ann Kennedy

Local connectivity balance shapes population dynamics in random recurrent networks

Disordered dynamical systems comprising many interacting units, from ecological communities to neural circuits, are ubiquitous, and understanding how connectivity shapes their collective behavior is a central theoretical challenge. One long-recognized feature of neural circuits is local connectivity balance, in which the excitatory...

💬 0 commentsarXiv:2608.30008v1PDF
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Posted in physics.flu-dyn · 2026-08-30 · Sohel Ahmed, Nanda Poddar, Jyotirmoy Rana, Kajal Kumar Mondal, Niall Madden

Solute dispersion in magnetically influenced multiphase flow through a porous tube: axial transport and microrotational effects

This study presents a theoretical investigation of generalized solute dispersion in magnetohydrodynamic multiphase tube flow with porous layers. A two-fluid analytical model is developed for applications in biofluid and environmental fluid dynamics. The model comprises a micropolar (non-Newtonian) fluid core representing the...

💬 0 commentsarXiv:2608.29946v1PDF
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Posted in cs.LG · 2026-08-30 · David Sulu, Lorenzo Di Fruscia, Jana M. Weber

Structural Hierarchy and Geometry in Molecular Representation Learning

Molecular self-supervised learning uses chemical structures to guide which molecular embeddings should be similar. We study whether explicitly encoding a molecule's Bemis-Murcko scaffold and using it to supervise the molecular embedding changes what the model learns. We further test whether this effect depends on the embedding...

💬 0 commentsarXiv:2608.29886v1PDF
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Posted in q-bio.SC · 2026-08-30 · Sk Raj Hossein, Eman Alwani, Andreas Buttenschön, Alexander G. Fletcher

Clustering versus sorting: a mass-conserving reaction-diffusion model of planar polarity puncta

Planar cell polarity is preceded by the clustering of polarity proteins into discrete, low-turnover membrane subdomains (puncta), yet the minimal interactions that nucleate puncta, set their number, and segregate opposite orientations remain unclear. We address these questions with a mass-conserving reaction-diffusion model in which...

💬 0 commentsarXiv:2608.29679v1PDF
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Posted in cs.CV · 2026-08-29 · Malika Nisal Ratnayake, Adel N. Toosi, James Cook, Romina Rader, Alan Dorin

AGRICAM: A Track-Mounted Crop Pollination Monitoring Robot

Insect pollination is critical for global food production, yet monitoring pollinators at commercial farm scale remains a challenge. Recent advances in computer vision and deep learning have enabled detailed analysis of pollinator behaviour, but monitoring must trade-off detail against spatial coverage and human or technological...

💬 0 commentsarXiv:2608.29237v1PDF
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Posted in q-bio.NC · 2026-08-29 · Teun van Gils, Rowan P. Sommers, Markus Ostarek, Peter Hagoort

Rate-Coding Bundle Memory: A Unified Model of Memory and Control for Symbolic Computation in the Brain

We propose a neurobiologically plausible model of cognition that combines the advantages of connectionist and symbolic systems, and that can explain a wide range of cognitive phenomena. This model, called Rate-Coding Bundle Memory (RCBM), is based on the Symbolic Subsystem Hypothesis, which posits that the brain implements a symbolic...

💬 0 commentsarXiv:2608.29189v1PDF
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Posted in q-bio.NC · 2026-08-29 · Wenjun Xia, Yan Xu, Zhengdi Zhang

Front-end and Back-end Computational Modeling of 40-Hz Auditory Steady-State Response Abnormalities in Schizophrenia

40-Hz ASSR is reduced in schizophrenia, but it is unclear if this reflects altered auditory input or cortical E/I dynamics. We hypothesized that similar group differences could arise via distinct model mechanisms. EEG gamma% and ITPC from 21 HC and 21 SCZ constrained an auditory front-end coupled to a Wilson-Cowan E/I model. We...

💬 0 commentsarXiv:2608.29104v1PDF
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Posted in cs.AI · 2026-08-29 · Runyu Guan, Dehao Wu, Qiqi Xie, Yang Li, Haohan Wang

Agentic AI uncovers conserved cross-tissue protein co-abundance programs inaccessible to single-dataset analysis

Protein co-abundance clusters preserved across tissues can reveal shared disease mechanisms and candidate therapeutic targets, particularly when proteins implicated in organ-confined diseases converge in peripheral or accessible tissues. However, previous cross-tissue studies have focused on biologically pre-selected tissue pairs,...

💬 0 commentsarXiv:2608.28990v1PDF
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Posted in q-bio.NC · 2026-08-28 · Seyed Majid Razavi, Saeed Tajik Hesarkuchak, Triet M. Tran, Mehdi Zaeifi, Amirhossein Arezoumand, Farnaz Zamani Esfahlani, Jason A. Oliver, Sina Khanmohammadi

Structurally Informed Connectivity Disruptions in Cocaine Use Disorder

Cocaine Use Disorder (CUD) is associated with widespread alterations in large-scale functional brain networks, yet the mechanisms contributing to these changes and their relationship to clinical and cognitive outcomes remain poorly understood. To address this gap, we introduce a framework to extract structurally informed dynamic...

💬 0 commentsarXiv:2608.28892v1PDF
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Posted in q-bio.GN · 2026-08-28 · Calvin McCarter

Confounder-Aware Feature Correction for Single-Cell Batch Integration

Batch integration is a central preprocessing step in single-cell genomics, where datasets collected across experiments, donors, and protocols must be combined despite pervasive technical batch effects. The leading integration methods produce a shared low-dimensional embedding, which discards the corrected gene-expression values that...

💬 0 commentsarXiv:2608.28849v1PDF
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Posted in q-bio.BM · 2026-08-28 · Riku Itsuji, Yuanhao Wang, Xingjian Li, Seonghui Min, Hideo Saito, Min Xu

Reconstruction-Aware Cryo-EM Particle Picking

Cryo-electron microscopy (cryo-EM) determines the structures of proteins and macromolecular assemblies at near-atomic resolution, and the final 3D reconstruction depends on extracting a clean particle stack from noisy micrographs. This extraction decomposes into three sub-tasks, namely particle picking, contamination removal, and 2D...

💬 0 commentsarXiv:2608.28838v1PDF
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Posted in q-bio.QM · 2026-08-28 · Riku Itsuji, Rintaro Otsubo, Ryo Fujii, Xingjian Li, Xiaolong Wu, Hideo Saito, Min Xu

CryoAnomaly: Few-Shot Cryo-EM Particle Picking via Anomaly-Guided Hard Negative Suppression

Cryo-electron microscopy (cryo-EM) is crucial for analyzing 3D biological structures, in which automated particle picking is essential for the workflow. However, fully supervised methods require extensive manual annotations. While few-shot learning offers a potential solution, existing approaches struggle to handle the diverse...

💬 0 commentsarXiv:2608.28817v1PDF